write.hgdp: Export genotypes in Stanford HGDP format
In andrewparkermorgan/argyle: Basic interface and QC for genotypes from Illumina Infinium arrays
Description
Usage
Arguments
Details
References
Description
Export genotypes in Stanford HGDP format
Usage
1
write.hgdp(gty, prefix, ...)
Arguments
gty
a genotypes object
prefix
filename prefix for output; result will be two files, {prefix}.geno and
with genotypes and {prefix}.map with marker map.
...
ignored
Details
Write genotypes to disk in the Stanford HGDP format, which can be read by (among
others) the PGDSpider format-conversion suite.
References
Lischer HEL and Excoffier L (2012) PGDSpider: An automated data conversion tool for connecting
population genetics and genomics programs. Bioinformatics 28: 298-299.
andrewparkermorgan/argyle documentation built on May 10, 2019, 11:08 a.m.
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Description Usage Arguments Details References
Description
Export genotypes in Stanford HGDP format
Usage
1 | write.hgdp(gty, prefix, ...)
|
Arguments
gty |
a |
prefix |
filename prefix for output; result will be two files, |
... |
ignored |
Details
Write genotypes to disk in the Stanford HGDP format, which can be read by (among others) the PGDSpider format-conversion suite.
References
Lischer HEL and Excoffier L (2012) PGDSpider: An automated data conversion tool for connecting population genetics and genomics programs. Bioinformatics 28: 298-299.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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