sexysum: Summary stats for the sex chromosomes
In andrewparkermorgan/argyle: Basic interface and QC for genotypes from Illumina Infinium arrays
Description
Usage
Arguments
Details
Value
Description
Summary stats for the sex chromosomes
Usage
1
Arguments
gty
a genotypes object
clean
logical; for *MUGA arrays, use only known-good Y chromosome markers
...
ignored
Details
If genotypes are not present for *both* sex chromosomes, the results are unpredictable.
Value
A dataframe of all pre-existing sample metadata with additional columns Ygood (count of good calls on the
Y chromosome), Xhet (count of heterozygous calls on the X chromosome), ix (mean intensity of X markers) and
iy (mean intensity of Y markers). If no intensity data is availalble, the latter two columns are not included.
andrewparkermorgan/argyle documentation built on May 10, 2019, 11:08 a.m.
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Description Usage Arguments Details Value
Description
Summary stats for the sex chromosomes
Usage
1 |
Arguments
gty |
a |
clean |
logical; for *MUGA arrays, use only known-good Y chromosome markers |
... |
ignored |
Details
If genotypes are not present for *both* sex chromosomes, the results are unpredictable.
Value
A dataframe of all pre-existing sample metadata with additional columns Ygood (count of good calls on the
Y chromosome), Xhet (count of heterozygous calls on the X chromosome), ix (mean intensity of X markers) and
iy (mean intensity of Y markers). If no intensity data is availalble, the latter two columns are not included.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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