API for arendsee/synder
Use Synteny to Filter Genomic Search

Global functions
DumpResult Man page
DumpResult-class Man page
GFF Man page
GFF-class Man page
SearchResult Man page
SearchResult-class Man page
Synmap Man page
Synmap-class Man page
anon_search Man page Source code
as.data.frame.DumpResult Man page Source code
as.data.frame.GFF Man page Source code
as.data.frame.SearchResult Man page Source code
as.data.frame.Seqinfo Man page Source code
as.data.frame.Synmap Man page Source code
as_bioc_strand Source code
as_conlen Man page Source code
as_conlen.NULL Man page Source code
as_conlen.Seqinfo Man page Source code
as_conlen.character Man page Source code
as_conlen.data.frame Man page Source code
as_gff Man page Source code
as_gff.GFF Man page Source code
as_gff.GRanges Man page Source code
as_gff.NULL Man page Source code
as_gff.character Man page Source code
as_gff.data.frame Man page Source code
as_gff_strand Source code
as_synmap Man page Source code
as_synmap.Axt Man page Source code
as_synmap.GRangePairs Man page Source code
as_synmap.NULL Man page Source code
as_synmap.Synmap Man page Source code
as_synmap.character Man page Source code
as_synmap.data.frame Man page Source code
base_GRangePairs_to_df Source code
c_count Man page Source code
c_dump Man page Source code
c_filter Man page Source code
c_map Man page Source code
c_search Man page Source code
check_parameters Source code
df2file Source code
dump Man page Source code
flag_summary Man page Source code
handle_inversions Source code
intro_1 Man page
intro_2 Man page
is_conlen Source code
is_dump Source code
is_gff Source code
is_incoherent Man page Source code
is_search_result Source code
is_synmap Source code
is_unassembled Man page Source code
make_GRanges Source code
neighborhood_madness Man page Source code
plot.DumpResult Man page Source code
plot.SearchResult Man page Source code
plot.Synmap Man page Source code
print.DumpResult Man page Source code
print.GFF Man page Source code
print.SearchResult Man page Source code
print.Synmap Man page Source code
read_conlen Man page Source code
read_gff Man page Source code
read_synmap Man page Source code
search Man page Source code
synder Man page
synder-package Man page
synder_cast Man page
synder_classes Man page
synder_commands Man page
synder_is Source code
synder_print Man page
synder_read Man page
syntenic_density Man page Source code
syntenic_scatter Man page Source code
to_global Source code
toy Man page
ty1 Man page
wrapper Source code
zero_base Source code
arendsee/synder documentation built on March 23, 2018, 1:22 a.m.