API for arendsee/synder
Use Synteny to Filter Genomic Search
| Global functions | |
|---|---|
| .overlaps | Man page |
| DumpResult | Man page |
| DumpResult-class | Man page |
| GFF | Man page |
| GFF-class | Man page |
| SearchResult | Man page |
| SearchResult-class | Man page |
| Synmap | Man page |
| Synmap-class | Man page |
| anon_search | Man page |
| as.data.frame.DumpResult | Man page |
| as.data.frame.GFF | Man page |
| as.data.frame.SearchResult | Man page |
| as.data.frame.Seqinfo | Man page |
| as.data.frame.Synmap | Man page |
| as_conlen | Man page |
| as_conlen.NULL | Man page |
| as_conlen.Seqinfo | Man page |
| as_conlen.character | Man page |
| as_conlen.data.frame | Man page |
| as_gff | Man page |
| as_gff.GFF | Man page |
| as_gff.GRanges | Man page |
| as_gff.NULL | Man page |
| as_gff.character | Man page |
| as_gff.data.frame | Man page |
| as_synmap | Man page |
| as_synmap.Axt | Man page |
| as_synmap.GRangePairs | Man page |
| as_synmap.NULL | Man page |
| as_synmap.Synmap | Man page |
| as_synmap.character | Man page |
| as_synmap.data.frame | Man page |
| c_count | Man page |
| c_dump | Man page |
| c_filter | Man page |
| c_map | Man page |
| c_search | Man page |
| dump | Man page |
| featureMap | Man page |
| flag_summary | Man page |
| intro_1 | Man page |
| intro_2 | Man page |
| is_incoherent | Man page |
| is_unassembled | Man page |
| load_blastp_file | Man page |
| load_tblastn_file | Man page |
| make_blastp_map | Man page |
| make_tblastn_gene_map | Man page |
| make_tblastn_si_map | Man page |
| neighborhood_madness | Man page |
| plot.DumpResult | Man page |
| plot.SearchResult | Man page |
| plot.Synmap | Man page |
| print.DumpResult | Man page |
| print.GFF | Man page |
| print.SearchResult | Man page |
| print.Synmap | Man page |
| read_conlen | Man page |
| read_gff | Man page |
| read_synmap | Man page |
| search | Man page |
| synder | Man page |
| synder-package | Man page |
| synder_cast | Man page |
| synder_classes | Man page |
| synder_commands | Man page |
| synder_print | Man page |
| synder_read | Man page |
| syntenic_density | Man page |
| syntenic_scatter | Man page |
| toy | Man page |
| ty1 | Man page |
