featureMap: Map features between GFFs based on a synder SearchResult
In arendsee/synder: Use Synteny to Filter Genomic Search
Description
Map features between GFFs based on a synder SearchResult
Usage
1
2
featureMap(srcres, tgff, fgff, tfromAttr = identity,
ffromAttr = identity)
Arguments
srcres
tidy search result (from .tidy_searchResult)
tgff
data.frame for GFF object for target species (from .tidy_gff)
fgff
data.frame for GFF object for focal species (from .tidy_gff)
tfromAttr
function (optional) extract IDs attr column in target GFF
ffromAttr
function (optional) extract IDs attr column in focal GFF
arendsee/synder documentation built on May 10, 2019, 1:26 p.m.
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Description
Map features between GFFs based on a synder SearchResult
Usage
1 2 | featureMap(srcres, tgff, fgff, tfromAttr = identity,
ffromAttr = identity)
|
Arguments
srcres |
tidy search result (from .tidy_searchResult) |
tgff |
data.frame for GFF object for target species (from .tidy_gff) |
fgff |
data.frame for GFF object for focal species (from .tidy_gff) |
tfromAttr |
function (optional) extract IDs attr column in target GFF |
ffromAttr |
function (optional) extract IDs attr column in focal GFF |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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