anon_search: Wrapper for search allowing simple interval inputs
In arendsee/synder: Use Synteny to Filter Genomic Search
Description
The function search allows powerful mapping to target search
intervals using a feature table (GFF). This approach requires building a GFF
table, which is a needless hassle if you want to search your own intervals
(rather than known features). anon_search addresses this problem by
allowing searches given only start and stop positions and contig name.
Usage
1
anon_search(syn, a, b, seqid, ...)
Arguments
syn
synteny map file or object
a, b
start and stop locations
seqid
the name of the reference query contig
...
additional arguments sent to synder::search
arendsee/synder documentation built on May 10, 2019, 1:26 p.m.
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Description
The function search allows powerful mapping to target search
intervals using a feature table (GFF). This approach requires building a GFF
table, which is a needless hassle if you want to search your own intervals
(rather than known features). anon_search addresses this problem by
allowing searches given only start and stop positions and contig name.
Usage
1 | anon_search(syn, a, b, seqid, ...)
|
Arguments
syn |
synteny map file or object |
a, b |
start and stop locations |
seqid |
the name of the reference query contig |
... |
additional arguments sent to synder::search |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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