c_search: predict search intervals
In arendsee/synder: Use Synteny to Filter Genomic Search
Description
predict search intervals
Usage
1
Arguments
syn
synteny map file name
gff
GFF file name
tcl
target contig lengths file name
qcl
target contig lengths file name
swap
reverse direction of synteny map (e.g. swap query and target)
k
match fuziness, integer
r
score decay rate, 0 means no context, high means more context
trans
score transform methods, single character
offsets
4-element integer vector of [01] offsets (start/stop
offsets for the synteny maps and the GFF)
arendsee/synder documentation built on May 10, 2019, 1:26 p.m.
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Description
predict search intervals
Usage
1 |
Arguments
syn |
synteny map file name |
gff |
GFF file name |
tcl |
target contig lengths file name |
qcl |
target contig lengths file name |
swap |
reverse direction of synteny map (e.g. swap query and target) |
k |
match fuziness, integer |
r |
score decay rate, 0 means no context, high means more context |
trans |
score transform methods, single character |
offsets |
4-element integer vector of [01] offsets (start/stop offsets for the synteny maps and the GFF) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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