as_gff: Convert to a synder GFF object

In arendsee/synder: Use Synteny to Filter Genomic Search

Description

as_gff.character will attempt to load a file, which is expected to be TAB-delimited and headerless.

Usage

as_gff(x, ...)

## S3 method for class 'NULL'
as_gff(x, ...)

## S3 method for class 'GFF'
as_gff(x, ...)

## S3 method for class 'GRanges'
as_gff(x, seqinfo_ = NULL, source = NULL,
  type = NULL, score = NULL, phase = NULL, id = NULL, ...)

## S3 method for class 'character'
as_gff(x, ...)

## S3 method for class 'data.frame'
as_gff(x, seqinfo_ = NULL, ...)

Arguments

x	Thing to be converted
...	Additional arguments
seqinfo_	Seqinfo object
source	character vector for GFF column source meta-column
type	character vector for GFF column type meta-column
score	numeric vector for GFF column score meta-column
phase	integer vector for GFF column phase meta-column
id	character vector for GFF column attr, is currently used as the name of the query

arendsee/synder documentation built on May 10, 2019, 1:26 p.m.