remove links that disagree with the synteny map
1 | c_filter(syn, hit, swap, k, r, trans, offsets)
|
syn |
synteny map file name |
hit |
int file name |
swap |
reverse direction of synteny map (e.g. swap query and target) |
k |
match fuziness, integer |
r |
score decay rate, 0 means no context, high means more context |
trans |
score transform methods, single character |
offsets |
4-element integer vector of [01] offsets (start/stop offsets for the synteny maps and the GFF) |
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