c_filter: remove links that disagree with the synteny map
In arendsee/synder: Use Synteny to Filter Genomic Search
Description
remove links that disagree with the synteny map
Usage
1
c_filter(syn, hit, swap, k, r, trans, offsets)
Arguments
syn
synteny map file name
hit
int file name
swap
reverse direction of synteny map (e.g. swap query and target)
k
match fuziness, integer
r
score decay rate, 0 means no context, high means more context
trans
score transform methods, single character
offsets
4-element integer vector of [01] offsets (start/stop
offsets for the synteny maps and the GFF)
arendsee/synder documentation built on May 10, 2019, 1:26 p.m.
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Description
remove links that disagree with the synteny map
Usage
1 | c_filter(syn, hit, swap, k, r, trans, offsets)
|
Arguments
syn |
synteny map file name |
hit |
int file name |
swap |
reverse direction of synteny map (e.g. swap query and target) |
k |
match fuziness, integer |
r |
score decay rate, 0 means no context, high means more context |
trans |
score transform methods, single character |
offsets |
4-element integer vector of [01] offsets (start/stop offsets for the synteny maps and the GFF) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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