c_dump: print all blocks with contiguous set ids

Description Usage Arguments

Description

print all blocks with contiguous set ids

Usage

1
c_dump(syn, swap, trans, k, r, offsets)

Arguments

syn

synteny map file name

swap

reverse direction of synteny map (e.g. swap query and target)

trans

score transform methods, single character

k

match fuziness, integer

r

score decay rate, 0 means no context, high means more context

offsets

4-element integer vector of [01] offsets (start/stop offsets for the synteny maps and the GFF)


arendsee/synder documentation built on May 10, 2019, 1:26 p.m.