as_synmap: Convert to a synder Synmap object

In arendsee/synder: Use Synteny to Filter Genomic Search

Description

Convert to a synder Synmap object

Usage

as_synmap(x, ...)

## S3 method for class 'NULL'
as_synmap(x, ...)

## S3 method for class 'Synmap'
as_synmap(x, ...)

## S3 method for class 'character'
as_synmap(x, ...)

## S3 method for class 'Axt'
as_synmap(x, seqinfo_a = NULL, seqinfo_b = NULL, ...)

## S3 method for class 'data.frame'
as_synmap(x, seqinfo_a = NULL, seqinfo_b = NULL,
  ...)

## S3 method for class 'GRangePairs'
as_synmap(x, seqinfo_a = NULL, seqinfo_b = NULL,
  ...)

Arguments

x	Thing to be converted
...	Additional arguments
seqinfo_a	Seqinfo object for first GRanges entry
seqinfo_b	Seqinfo object for second GRanges entry

arendsee/synder documentation built on May 10, 2019, 1:26 p.m.