dot-overlaps: Join two tables by overlapping rows

In arendsee/synder: Use Synteny to Filter Genomic Search

Description

Join two tables by overlapping rows

Usage

.overlaps(x, xid, xa, xb, y, yid = xid, ya = xa, yb = xb,
  add_id = TRUE)

Arguments

x	data.frame: table with interval info in each row (with arbitrary additional columns).
xid	character: name of the scaffold column in x
xa	character: name of the start position column in x
xb	character: name of the stop position column in x
y	data.frame: like x, but for a second set of intervals
yid	character: name of the scaffold column in y
ya	character: name of the start position column in y
yb	character: name of the stop position column in y
add_id	logical: whether to add a column of indices holding the column orders of the original tables (named "xid" and "yid", respectively)

Value

data.frame with columns corresponding to those of x and y and rows being cases where intervals overlap between the two.

arendsee/synder documentation built on May 10, 2019, 1:26 p.m.