subsetRegionAB: Retain loops that have anchors in two specified regions

Description Usage Arguments Value Examples

Description

subsetRegionAB returns a loops object where one anchor maps to regionA and the other maps to region B

Usage

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subsetRegionAB(dlo, regionA, regionB)

## S4 method for signature 'loops,GRanges,GRanges'
subsetRegionAB(dlo, regionA, regionB)

Arguments

dlo

A loops object

regionA

A GRanges object

regionB

A GRanges object

Value

A loops object

Examples

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# Return the width for loops 
library(GenomicRanges)
rda<-paste(system.file('rda',package='diffloop'),'loops.small.rda',sep='/')
load(rda)
regA <- GRanges(c('1'),IRanges(c(36000000),c(36100000)))
regB <- GRanges(c('1'),IRanges(c(36200000),c(36300000)))
splits <- subsetRegionAB(loops.small, regA, regB)

aryeelab/diffloop documentation built on May 12, 2019, 3:42 a.m.