barzine/barzinePhdData
Data to be used with barzinePhdR

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uhlen.cufflinks.fpkm.pooled.tech: Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)...

uhlen.cufflinks.fpkm.pooled.tech: Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)...
In barzine/barzinePhdData: Data to be used with barzinePhdR

Description Usage Format

Description

Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836) mapped to Ensembl 76 (GRCh38) and quantified with Cufflinks2 and normalised with the FPKM method. All the technical replicates have been aggregated together (mean values). See for more details chapters 1 and 2 of Barzine, M.P PhD thesis: Investigating Normal Human Gene Expression in Tissues with High-throughput Transcriptomic and Proteomic data.

Usage

1
uhlen.cufflinks.fpkm.pooled.tech

Format

A data frame with 46932 transcritps (ie rows/observations) for 122 tissues (ie columns/variables)

#'

Adipose.V1

numeric, FPKM

Adipose.V20

numeric, FPKM

Adipose.V2

numeric, FPKM

Adipose.fat_8a

numeric, FPKM

Adipose.fat_8b

numeric, FPKM

Adrenal.V119

numeric, FPKM

Adrenal.V121

numeric, FPKM

Adrenal.V122

numeric, FPKM

Appendix.V155

numeric, FPKM

Appendix.V154

numeric, FPKM

Appendix.V160

numeric, FPKM

Urinarybladder.V177

numeric, FPKM

Urinarybladder.V176

numeric, FPKM

Bone.marrow.V250

numeric, FPKM

Bone.marrow.V248

numeric, FPKM

Bone.marrow.V249

numeric, FPKM

Bone.marrow.V230

numeric, FPKM

Cerebral.cortex.V29

numeric, FPKM

Cerebral.cortex.V103

numeric, FPKM

Cerebral.cortex.V102

numeric, FPKM

Colon.V10

numeric, FPKM

Colon.V15

numeric, FPKM

Colon.V11

numeric, FPKM

Colon.V22

numeric, FPKM

Colon.V14

numeric, FPKM

Colon.colon8a

numeric, FPKM

Colon.colon8b

numeric, FPKM

Duodenum.V150

numeric, FPKM

Duodenum.V145

numeric, FPKM

Endometrium.V200

numeric, FPKM

Endometrium.V165

numeric, FPKM

Endometrium.V143

numeric, FPKM

Endometrium.endometrium8a

numeric, FPKM

Endometrium.endometrium8b

numeric, FPKM

Esophagus.V184

numeric, FPKM

Esophagus.V185

numeric, FPKM

Esophagus.V183

numeric, FPKM

Fallopian.tube.fallopiantube_5a

numeric, FPKM

Fallopian.tube.fallopiantube_8b

numeric, FPKM

Fallopian.tube.fallopiantube_8c

numeric, FPKM

Fallopian.tube.fallopiantube_8d

numeric, FPKM

Fallopian.tube.fallopiantube_8e

numeric, FPKM

Gallbladder.V182

numeric, FPKM

Gallbladder.V179

numeric, FPKM

Gallbladder.V186

numeric, FPKM

Heart.V191

numeric, FPKM

Heart.V237

numeric, FPKM

Heart.V235

numeric, FPKM

Heart.V195

numeric, FPKM

Kidney.V24

numeric, FPKM

Kidney.V6

numeric, FPKM

Kidney.V23

numeric, FPKM

Kidney.V5

numeric, FPKM

Liver.V110

numeric, FPKM

Liver.V111

numeric, FPKM

Liver.V108

numeric, FPKM

Lung.V130

numeric, FPKM

Lung.V81

numeric, FPKM

Lung.V80

numeric, FPKM

Lung.V133

numeric, FPKM

Lung.V131

numeric, FPKM

Lymph.node.V193

numeric, FPKM

Lymph.node.V164

numeric, FPKM

Lymph.node.V157

numeric, FPKM

Lymph.node.V192

numeric, FPKM

Lymph.node.V190

numeric, FPKM

Ovary.V233

numeric, FPKM

Ovary.V234

numeric, FPKM

Ovary.ovary_8a

numeric, FPKM

Pancreas.V232

numeric, FPKM

Pancreas.V229

numeric, FPKM

Placenta.V224

numeric, FPKM

Placenta.V221

numeric, FPKM

Placenta.V76

numeric, FPKM

Placenta.V223

numeric, FPKM

Prostate.V127

numeric, FPKM

Prostate.V128

numeric, FPKM

Prostate.V129

numeric, FPKM

Prostate.V12

numeric, FPKM

Rectum.rectum_8a

numeric, FPKM

Rectum.rectum_8b

numeric, FPKM

Rectum.rectum_8c

numeric, FPKM

Rectum.rectum_8d

numeric, FPKM

Salivary.gland.V238

numeric, FPKM

Salivary.gland.V240

numeric, FPKM

Salivary.gland.V239

numeric, FPKM

Skeletal.muscle.skeletalmuscle_a

numeric, FPKM

Skeletal.muscle.skeletalmuscle_b

numeric, FPKM

Skeletal.muscle.skeletalmuscle_c

numeric, FPKM

Skeletal.muscle.skeletalmuscle_d

numeric, FPKM

Skeletal.muscle.skeletalmuscle_e

numeric, FPKM

Skin.V245

numeric, FPKM

Skin.V247

numeric, FPKM

Skin.V246

numeric, FPKM

Small.intestine.V151

numeric, FPKM

Small.intestine.V152

numeric, FPKM

Small.intestine.V153

numeric, FPKM

Small.intestine.V156

numeric, FPKM

Smooth.muscle.smoothmuscle_8a

numeric, FPKM

Smooth.muscle.smoothmuscle_8b

numeric, FPKM

Smooth.muscle.smoothmuscle_8c

numeric, FPKM

Spleen.V82

numeric, FPKM

Spleen.V83

numeric, FPKM

Spleen.V85

numeric, FPKM

Spleen.V84

numeric, FPKM

Stomach.V91

numeric, FPKM

Stomach.V90

numeric, FPKM

Stomach.V18

numeric, FPKM

Testis.V134

numeric, FPKM

Testis.V255

numeric, FPKM

Testis.V257

numeric, FPKM

Testis.V259

numeric, FPKM

Testis.V258

numeric, FPKM

Testis.V256

numeric, FPKM

Testis.V260

numeric, FPKM

Thyroid.V197

numeric, FPKM

Thyroid.V196

numeric, FPKM

Thyroid.V198

numeric, FPKM

Thyroid.V199

numeric, FPKM

Tonsil.tonsil_8a1

numeric, FPKM

Tonsil.tonsil_8b1

numeric, FPKM

Tonsil.tonsil_8e1

numeric, FPKM


barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.

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