uhlen.cufflinks.raw: Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)...

In barzine/barzinePhdData: Data to be used with barzinePhdR

Description

Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836) mapped to Ensembl 76 (GRCh38) and quantified with Cufflinks2 (not normalised expression values) See for more details chapters 1 and 2 of Barzine, M.P PhD thesis: Investigating Normal Human Gene Expression in Tissues with High-throughput Transcriptomic and Proteomic data.

Usage

uhlen.cufflinks.raw

Format

A data frame with 46803 transcritps (ie rows/observations) for 200 samples (ie columns/variables)

Salivarygland1

numeric, count

Lung1

numeric, count

Liver1

numeric, count

Heart1

numeric, count

Lymphnode1

numeric, count

Prostate1

numeric, count

Heart2

numeric, count

Adipose1

numeric, count

Bonemarrow1

numeric, count

Bladder1

numeric, count

Adrenal1

numeric, count

Placenta1

numeric, count

Thyroid1

numeric, count

Spleen1

numeric, count

Skin1

numeric, count

Prostate2

numeric, count

Lung2

numeric, count

Adipose2

numeric, count

Adipose3

numeric, count

Smallintestine1

numeric, count

Appendix1

numeric, count

Lung3

numeric, count

Gallbladder1

numeric, count

Colon1

numeric, count

Gallbladder2

numeric, count

Testis1

numeric, count

Testis2

numeric, count

Testis3

numeric, count

Lung4

numeric, count

Prostate3

numeric, count

Bladder2

numeric, count

Heart3

numeric, count

Colon2

numeric, count

Thyroid2

numeric, count

Prostate4

numeric, count

Gallbladder3

numeric, count

Endometrium1

numeric, count

Esophagus1

numeric, count

Thyroid3

numeric, count

Smallintestine2

numeric, count

Prostate5

numeric, count

Appendix2

numeric, count

Heart4

numeric, count

Endometrium2

numeric, count

Stomach1

numeric, count

Bladder3

numeric, count

Lymphnode2

numeric, count

Skin2

numeric, count

Lymphnode3

numeric, count

Placenta2

numeric, count

Placenta3

numeric, count

Skin3

numeric, count

Placenta4

numeric, count

Adipose4

numeric, count

Stomach2

numeric, count

Ovary1

numeric, count

Smallintestine3

numeric, count

Salivarygland2

numeric, count

Kidney1

numeric, count

Heart5

numeric, count

Adrenal2

numeric, count

Endometrium3

numeric, count

Lymphnode4

numeric, count

Smallintestine4

numeric, count

Heart6

numeric, count

Lymphnode5

numeric, count

Testis4

numeric, count

Adrenal3

numeric, count

Lymphnode6

numeric, count

Liver2

numeric, count

Bonemarrow2

numeric, count

Bonemarrow3

numeric, count

Thyroid4

numeric, count

Esophagus2

numeric, count

Placenta5

numeric, count

Colon3

numeric, count

Skin4

numeric, count

Ovary2

numeric, count

Colon4

numeric, count

Bonemarrow4

numeric, count

Spleen2

numeric, count

Bonemarrow5

numeric, count

Prostate6

numeric, count

Smallintestine5

numeric, count

Smallintestine6

numeric, count

Prostate7

numeric, count

Esophagus3

numeric, count

Thyroid5

numeric, count

Heart7

numeric, count

Liver3

numeric, count

Testis5

numeric, count

Spleen3

numeric, count

Adrenal4

numeric, count

Salivarygland3

numeric, count

Smallintestine7

numeric, count

Salivarygland4

numeric, count

Bladder4

numeric, count

Thyroid6

numeric, count

Smallintestine8

numeric, count

Lung5

numeric, count

Bonemarrow6

numeric, count

Lymphnode7

numeric, count

Gallbladder4

numeric, count

Thyroid7

numeric, count

Pancreas1

numeric, count

Heart8

numeric, count

Adipose5

numeric, count

Cerebralcortex1

numeric, count

Endometrium4

numeric, count

Esophagus4

numeric, count

Heart9

numeric, count

Pancreas2

numeric, count

Appendix3

numeric, count

Endometrium5

numeric, count

Lung6

numeric, count

Lymphnode8

numeric, count

Lymphnode9

numeric, count

Duodenum1

numeric, count

Kidney2

numeric, count

Lung7

numeric, count

Duodenum2

numeric, count

Testis6

numeric, count

Bladder5

numeric, count

Spleen4

numeric, count

Salivarygland5

numeric, count

Adrenal5

numeric, count

Liver4

numeric, count

Adrenal6

numeric, count

Bladder6

numeric, count

Appendix4

numeric, count

Cerebralcortex2

numeric, count

Testis7

numeric, count

Duodenum3

numeric, count

Ovary3

numeric, count

Salivarygland6

numeric, count

Skin5

numeric, count

Duodenum4

numeric, count

Colon5

numeric, count

Liver5

numeric, count

Skin6

numeric, count

Appendix5

numeric, count

Pancreas3

numeric, count

Stomach3

numeric, count

Kidney3

numeric, count

Bonemarrow7

numeric, count

Gallbladder5

numeric, count

Lymphnode10

numeric, count

Esophagus5

numeric, count

Spleen5

numeric, count

Gallbladder6

numeric, count

Lymphnode11

numeric, count

Placenta6

numeric, count

Cerebralcortex3

numeric, count

Placenta7

numeric, count

Pancreas4

numeric, count

Gallbladder7

numeric, count

Appendix6

numeric, count

Ovary4

numeric, count

Thyroid8

numeric, count

Colon6

numeric, count

Stomach4

numeric, count

Bonemarrow8

numeric, count

Lung8

numeric, count

Lymphnode12

numeric, count

Esophagus6

numeric, count

Endometrium6

numeric, count

Thyroid9

numeric, count

Testis8

numeric, count

Lymphnode13

numeric, count

Kidney4

numeric, count

Endometrium7

numeric, count

Colon7

numeric, count

Colon8

numeric, count

Endometrium8

numeric, count

Endometrium9

numeric, count

Fallopiantube1

numeric, count

Fallopiantube2

numeric, count

Fallopiantube3

numeric, count

Fallopiantube4

numeric, count

Fallopiantube5

numeric, count

Fallopiantube6

numeric, count

Adipose6

numeric, count

Adipose7

numeric, count

Rectum1

numeric, count

Rectum2

numeric, count

Rectum3

numeric, count

Rectum4

numeric, count

Skeletalmuscle1

numeric, count

Skeletalmuscle2

numeric, count

Skeletalmuscle3

numeric, count

Skeletalmuscle4

numeric, count

Skeletalmuscle5

numeric, count

Skeletalmuscle6

numeric, count

Smoothmuscle1

numeric, count

Smoothmuscle2

numeric, count

Smoothmuscle3

numeric, count

Tonsil1

numeric, count

Tonsil2

numeric, count

Tonsil3

numeric, count

Ovary5

numeric, count

barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.