uhlen.cufflinks.raw.pooled: Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)...

In barzine/barzinePhdData: Data to be used with barzinePhdR

Description

Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836) mapped to Ensembl 76 (GRCh38) and quantified with Cufflinks2 (not normalised counts). All the technical replicates have been aggregated together (mean values) and then the biological replicates have been aggregated by taking the median values. See for more details chapters 1 and 2 of Barzine, M.P PhD thesis: Investigating Normal Human Gene Expression in Tissues with High-throughput Transcriptomic and Proteomic data.

Usage

uhlen.cufflinks.raw.pooled

Format

A data frame with 46932 transcritps (ie rows/observations) for 32 tissues (ie columns/variables)

Adipose

numeric, count

Adrenal

numeric, count

Appendix

numeric, count

Urinarybladder

numeric, count

Bone marrow

numeric, count

Cortex

numeric, count

Colon

numeric, count

Duodenum

numeric, count

Uterus

numeric, count

Oesophagus

numeric, count

Fallopian tube

numeric, count

Gallbladder

numeric, count

Heart

numeric, count

Kidney

numeric, count

Liver

numeric, count

Lung

numeric, count

Lymph node

numeric, count

Ovary

numeric, count

Pancreas

numeric, count

Placenta

numeric, count

Prostate

numeric, count

Rectum

numeric, count

Salivary gland

numeric, count

Skeletal muscle

numeric, count

Skin

numeric, count

Small intestine

numeric, count

Smooth muscle

numeric, count

Spleen

numeric, count

Stomach

numeric, count

Testis

numeric, count

Thyroid

numeric, count

Tonsil

numeric, count

barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.