uhlen.cufflinks.tpm: Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)...

In barzine/barzinePhdData: Data to be used with barzinePhdR

Description

Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836) mapped to Ensembl 76 (GRCh38) and quantified with Cufflinks2 and normalised with the FPKM method and then converted to TPM. See for more details chapters 1 and 2 of Barzine, M.P PhD thesis: Investigating Normal Human Gene Expression in Tissues with High-throughput Transcriptomic and Proteomic data.

Usage

uhlen.cufflinks.tpm

Format

A data frame with 46932 transcritps (ie rows/observations) for 200 samples (ie columns/variables)

Salivarygland1

numeric, TPM

Lung1

numeric, TPM

Liver1

numeric, TPM

Heart1

numeric, TPM

Lymphnode1

numeric, TPM

Prostate1

numeric, TPM

Heart2

numeric, TPM

Adipose1

numeric, TPM

Bonemarrow1

numeric, TPM

Bladder1

numeric, TPM

Adrenal1

numeric, TPM

Placenta1

numeric, TPM

Thyroid1

numeric, TPM

Spleen1

numeric, TPM

Skin1

numeric, TPM

Prostate2

numeric, TPM

Lung2

numeric, TPM

Adipose2

numeric, TPM

Adipose3

numeric, TPM

Smallintestine1

numeric, TPM

Appendix1

numeric, TPM

Lung3

numeric, TPM

Gallbladder1

numeric, TPM

Colon1

numeric, TPM

Gallbladder2

numeric, TPM

Testis1

numeric, TPM

Testis2

numeric, TPM

Testis3

numeric, TPM

Lung4

numeric, TPM

Prostate3

numeric, TPM

Bladder2

numeric, TPM

Heart3

numeric, TPM

Colon2

numeric, TPM

Thyroid2

numeric, TPM

Prostate4

numeric, TPM

Gallbladder3

numeric, TPM

Endometrium1

numeric, TPM

Esophagus1

numeric, TPM

Thyroid3

numeric, TPM

Smallintestine2

numeric, TPM

Prostate5

numeric, TPM

Appendix2

numeric, TPM

Heart4

numeric, TPM

Endometrium2

numeric, TPM

Stomach1

numeric, TPM

Bladder3

numeric, TPM

Lymphnode2

numeric, TPM

Skin2

numeric, TPM

Lymphnode3

numeric, TPM

Placenta2

numeric, TPM

Placenta3

numeric, TPM

Skin3

numeric, TPM

Placenta4

numeric, TPM

Adipose4

numeric, TPM

Stomach2

numeric, TPM

Ovary1

numeric, TPM

Smallintestine3

numeric, TPM

Salivarygland2

numeric, TPM

Kidney1

numeric, TPM

Heart5

numeric, TPM

Adrenal2

numeric, TPM

Endometrium3

numeric, TPM

Lymphnode4

numeric, TPM

Smallintestine4

numeric, TPM

Heart6

numeric, TPM

Lymphnode5

numeric, TPM

Testis4

numeric, TPM

Adrenal3

numeric, TPM

Lymphnode6

numeric, TPM

Liver2

numeric, TPM

Bonemarrow2

numeric, TPM

Bonemarrow3

numeric, TPM

Thyroid4

numeric, TPM

Esophagus2

numeric, TPM

Placenta5

numeric, TPM

Colon3

numeric, TPM

Skin4

numeric, TPM

Ovary2

numeric, TPM

Colon4

numeric, TPM

Bonemarrow4

numeric, TPM

Spleen2

numeric, TPM

Bonemarrow5

numeric, TPM

Prostate6

numeric, TPM

Smallintestine5

numeric, TPM

Smallintestine6

numeric, TPM

Prostate7

numeric, TPM

Esophagus3

numeric, TPM

Thyroid5

numeric, TPM

Heart7

numeric, TPM

Liver3

numeric, TPM

Testis5

numeric, TPM

Spleen3

numeric, TPM

Adrenal4

numeric, TPM

Salivarygland3

numeric, TPM

Smallintestine7

numeric, TPM

Salivarygland4

numeric, TPM

Bladder4

numeric, TPM

Thyroid6

numeric, TPM

Smallintestine8

numeric, TPM

Lung5

numeric, TPM

Bonemarrow6

numeric, TPM

Lymphnode7

numeric, TPM

Gallbladder4

numeric, TPM

Thyroid7

numeric, TPM

Pancreas1

numeric, TPM

Heart8

numeric, TPM

Adipose5

numeric, TPM

Cerebralcortex1

numeric, TPM

Endometrium4

numeric, TPM

Esophagus4

numeric, TPM

Heart9

numeric, TPM

Pancreas2

numeric, TPM

Appendix3

numeric, TPM

Endometrium5

numeric, TPM

Lung6

numeric, TPM

Lymphnode8

numeric, TPM

Lymphnode9

numeric, TPM

Duodenum1

numeric, TPM

Kidney2

numeric, TPM

Lung7

numeric, TPM

Duodenum2

numeric, TPM

Testis6

numeric, TPM

Bladder5

numeric, TPM

Spleen4

numeric, TPM

Salivarygland5

numeric, TPM

Adrenal5

numeric, TPM

Liver4

numeric, TPM

Adrenal6

numeric, TPM

Bladder6

numeric, TPM

Appendix4

numeric, TPM

Cerebralcortex2

numeric, TPM

Testis7

numeric, TPM

Duodenum3

numeric, TPM

Ovary3

numeric, TPM

Salivarygland6

numeric, TPM

Skin5

numeric, TPM

Duodenum4

numeric, TPM

Colon5

numeric, TPM

Liver5

numeric, TPM

Skin6

numeric, TPM

Appendix5

numeric, TPM

Pancreas3

numeric, TPM

Stomach3

numeric, TPM

Kidney3

numeric, TPM

Bonemarrow7

numeric, TPM

Gallbladder5

numeric, TPM

Lymphnode10

numeric, TPM

Esophagus5

numeric, TPM

Spleen5

numeric, TPM

Gallbladder6

numeric, TPM

Lymphnode11

numeric, TPM

Placenta6

numeric, TPM

Cerebralcortex3

numeric, TPM

Placenta7

numeric, TPM

Pancreas4

numeric, TPM

Gallbladder7

numeric, TPM

Appendix6

numeric, TPM

Ovary4

numeric, TPM

Thyroid8

numeric, TPM

Colon6

numeric, TPM

Stomach4

numeric, TPM

Bonemarrow8

numeric, TPM

Lung8

numeric, TPM

Lymphnode12

numeric, TPM

Esophagus6

numeric, TPM

Endometrium6

numeric, TPM

Thyroid9

numeric, TPM

Testis8

numeric, TPM

Lymphnode13

numeric, TPM

Kidney4

numeric, TPM

Endometrium7

numeric, TPM

Colon7

numeric, TPM

Colon8

numeric, TPM

Endometrium8

numeric, TPM

Endometrium9

numeric, TPM

Fallopiantube1

numeric, TPM

Fallopiantube2

numeric, TPM

Fallopiantube3

numeric, TPM

Fallopiantube4

numeric, TPM

Fallopiantube5

numeric, TPM

Fallopiantube6

numeric, TPM

Adipose6

numeric, TPM

Adipose7

numeric, TPM

Rectum1

numeric, TPM

Rectum2

numeric, TPM

Rectum3

numeric, TPM

Rectum4

numeric, TPM

Skeletalmuscle1

numeric, TPM

Skeletalmuscle2

numeric, TPM

Skeletalmuscle3

numeric, TPM

Skeletalmuscle4

numeric, TPM

Skeletalmuscle5

numeric, TPM

Skeletalmuscle6

numeric, TPM

Smoothmuscle1

numeric, TPM

Smoothmuscle2

numeric, TPM

Smoothmuscle3

numeric, TPM

Tonsil1

numeric, TPM

Tonsil2

numeric, TPM

Tonsil3

numeric, TPM

Ovary5

numeric, TPM

barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.