uhlen.cufflinks.tpm.pooled.tech: Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)...

In barzine/barzinePhdData: Data to be used with barzinePhdR

Description

Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836) mapped to Ensembl 76 (GRCh38) and quantified with Cufflinks2 and normalised with the FPKM method and then converted to TPM. All the technical replicates have been aggregated together (mean values). See for more details chapters 1 and 2 of Barzine, M.P PhD thesis: Investigating Normal Human Gene Expression in Tissues with High-throughput Transcriptomic and Proteomic data.

Usage

uhlen.cufflinks.tpm.pooled.tech

Format

A data frame with 46932 transcritps (ie rows/observations) for 122 samples (ie columns/variables)

Adipose.V1

numeric, TPM

Adipose.V20

numeric, TPM

Adipose.V2

numeric, TPM

Adipose.fat_8a

numeric, TPM

Adipose.fat_8b

numeric, TPM

Adrenal.V119

numeric, TPM

Adrenal.V121

numeric, TPM

Adrenal.V122

numeric, TPM

Appendix.V155

numeric, TPM

Appendix.V154

numeric, TPM

Appendix.V160

numeric, TPM

Urinarybladder.V177

numeric, TPM

Urinarybladder.V176

numeric, TPM

Bone.marrow.V250

numeric, TPM

Bone.marrow.V248

numeric, TPM

Bone.marrow.V249

numeric, TPM

Bone.marrow.V230

numeric, TPM

Cerebral.cortex.V29

numeric, TPM

Cerebral.cortex.V103

numeric, TPM

Cerebral.cortex.V102

numeric, TPM

Colon.V10

numeric, TPM

Colon.V15

numeric, TPM

Colon.V11

numeric, TPM

Colon.V22

numeric, TPM

Colon.V14

numeric, TPM

Colon.colon8a

numeric, TPM

Colon.colon8b

numeric, TPM

Duodenum.V150

numeric, TPM

Duodenum.V145

numeric, TPM

Endometrium.V200

numeric, TPM

Endometrium.V165

numeric, TPM

Endometrium.V143

numeric, TPM

Endometrium.endometrium8a

numeric, TPM

Endometrium.endometrium8b

numeric, TPM

Esophagus.V184

numeric, TPM

Esophagus.V185

numeric, TPM

Esophagus.V183

numeric, TPM

Fallopian.tube.fallopiantube_5a

numeric, TPM

Fallopian.tube.fallopiantube_8b

numeric, TPM

Fallopian.tube.fallopiantube_8c

numeric, TPM

Fallopian.tube.fallopiantube_8d

numeric, TPM

Fallopian.tube.fallopiantube_8e

numeric, TPM

Gallbladder.V182

numeric, TPM

Gallbladder.V179

numeric, TPM

Gallbladder.V186

numeric, TPM

Heart.V191

numeric, TPM

Heart.V237

numeric, TPM

Heart.V235

numeric, TPM

Heart.V195

numeric, TPM

Kidney.V24

numeric, TPM

Kidney.V6

numeric, TPM

Kidney.V23

numeric, TPM

Kidney.V5

numeric, TPM

Liver.V110

numeric, TPM

Liver.V111

numeric, TPM

Liver.V108

numeric, TPM

Lung.V130

numeric, TPM

Lung.V81

numeric, TPM

Lung.V80

numeric, TPM

Lung.V133

numeric, TPM

Lung.V131

numeric, TPM

Lymph.node.V193

numeric, TPM

Lymph.node.V164

numeric, TPM

Lymph.node.V157

numeric, TPM

Lymph.node.V192

numeric, TPM

Lymph.node.V190

numeric, TPM

Ovary.V233

numeric, TPM

Ovary.V234

numeric, TPM

Ovary.ovary_8a

numeric, TPM

Pancreas.V232

numeric, TPM

Pancreas.V229

numeric, TPM

Placenta.V224

numeric, TPM

Placenta.V221

numeric, TPM

Placenta.V76

numeric, TPM

Placenta.V223

numeric, TPM

Prostate.V127

numeric, TPM

Prostate.V128

numeric, TPM

Prostate.V129

numeric, TPM

Prostate.V12

numeric, TPM

Rectum.rectum_8a

numeric, TPM

Rectum.rectum_8b

numeric, TPM

Rectum.rectum_8c

numeric, TPM

Rectum.rectum_8d

numeric, TPM

Salivary.gland.V238

numeric, TPM

Salivary.gland.V240

numeric, TPM

Salivary.gland.V239

numeric, TPM

Skeletal.muscle.skeletalmuscle_a

numeric, TPM

Skeletal.muscle.skeletalmuscle_b

numeric, TPM

Skeletal.muscle.skeletalmuscle_c

numeric, TPM

Skeletal.muscle.skeletalmuscle_d

numeric, TPM

Skeletal.muscle.skeletalmuscle_e

numeric, TPM

Skin.V245

numeric, TPM

Skin.V247

numeric, TPM

Skin.V246

numeric, TPM

Small.intestine.V151

numeric, TPM

Small.intestine.V152

numeric, TPM

Small.intestine.V153

numeric, TPM

Small.intestine.V156

numeric, TPM

Smooth.muscle.smoothmuscle_8a

numeric, TPM

Smooth.muscle.smoothmuscle_8b

numeric, TPM

Smooth.muscle.smoothmuscle_8c

numeric, TPM

Spleen.V82

numeric, TPM

Spleen.V83

numeric, TPM

Spleen.V85

numeric, TPM

Spleen.V84

numeric, TPM

Stomach.V91

numeric, TPM

Stomach.V90

numeric, TPM

Stomach.V18

numeric, TPM

Testis.V134

numeric, TPM

Testis.V255

numeric, TPM

Testis.V257

numeric, TPM

Testis.V259

numeric, TPM

Testis.V258

numeric, TPM

Testis.V256

numeric, TPM

Testis.V260

numeric, TPM

Thyroid.V197

numeric, TPM

Thyroid.V196

numeric, TPM

Thyroid.V198

numeric, TPM

Thyroid.V199

numeric, TPM

Tonsil.tonsil_8a1

numeric, TPM

Tonsil.tonsil_8b1

numeric, TPM

Tonsil.tonsil_8e1

numeric, TPM

barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.