uhlen.htseq.fpkm: Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)...

In barzine/barzinePhdData: Data to be used with barzinePhdR

Description

Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836) mapped to Ensembl 76 (GRCh38) and quantified with HTSeq-count normalised with the FPKM method. See for more details chapters 1 and 2 of Barzine, M.P PhD thesis: Investigating Normal Human Gene Expression in Tissues with High-throughput Transcriptomic and Proteomic data.

Usage

uhlen.htseq.fpkm

Format

A data frame with 52655 transcritps (ie rows/observations) for 200 samples (ie columns/variables)

Salivarygland1

numeric, FPKM

Lung1

numeric, FPKM

Liver1

numeric, FPKM

Heart1

numeric, FPKM

Lymphnode1

numeric, FPKM

Prostate1

numeric, FPKM

Heart2

numeric, FPKM

Adipose1

numeric, FPKM

Bonemarrow1

numeric, FPKM

Bladder1

numeric, FPKM

Adrenal1

numeric, FPKM

Placenta1

numeric, FPKM

Thyroid1

numeric, FPKM

Spleen1

numeric, FPKM

Skin1

numeric, FPKM

Prostate2

numeric, FPKM

Lung2

numeric, FPKM

Adipose2

numeric, FPKM

Adipose3

numeric, FPKM

Smallintestine1

numeric, FPKM

Appendix1

numeric, FPKM

Lung3

numeric, FPKM

Gallbladder1

numeric, FPKM

Colon1

numeric, FPKM

Gallbladder2

numeric, FPKM

Testis1

numeric, FPKM

Testis2

numeric, FPKM

Testis3

numeric, FPKM

Lung4

numeric, FPKM

Prostate3

numeric, FPKM

Bladder2

numeric, FPKM

Heart3

numeric, FPKM

Colon2

numeric, FPKM

Thyroid2

numeric, FPKM

Prostate4

numeric, FPKM

Gallbladder3

numeric, FPKM

Endometrium1

numeric, FPKM

Esophagus1

numeric, FPKM

Thyroid3

numeric, FPKM

Smallintestine2

numeric, FPKM

Prostate5

numeric, FPKM

Appendix2

numeric, FPKM

Heart4

numeric, FPKM

Endometrium2

numeric, FPKM

Stomach1

numeric, FPKM

Bladder3

numeric, FPKM

Lymphnode2

numeric, FPKM

Skin2

numeric, FPKM

Lymphnode3

numeric, FPKM

Placenta2

numeric, FPKM

Placenta3

numeric, FPKM

Skin3

numeric, FPKM

Placenta4

numeric, FPKM

Adipose4

numeric, FPKM

Stomach2

numeric, FPKM

Ovary1

numeric, FPKM

Smallintestine3

numeric, FPKM

Salivarygland2

numeric, FPKM

Kidney1

numeric, FPKM

Heart5

numeric, FPKM

Adrenal2

numeric, FPKM

Endometrium3

numeric, FPKM

Lymphnode4

numeric, FPKM

Smallintestine4

numeric, FPKM

Heart6

numeric, FPKM

Lymphnode5

numeric, FPKM

Testis4

numeric, FPKM

Adrenal3

numeric, FPKM

Lymphnode6

numeric, FPKM

Liver2

numeric, FPKM

Bonemarrow2

numeric, FPKM

Bonemarrow3

numeric, FPKM

Thyroid4

numeric, FPKM

Esophagus2

numeric, FPKM

Placenta5

numeric, FPKM

Colon3

numeric, FPKM

Skin4

numeric, FPKM

Ovary2

numeric, FPKM

Colon4

numeric, FPKM

Bonemarrow4

numeric, FPKM

Spleen2

numeric, FPKM

Bonemarrow5

numeric, FPKM

Prostate6

numeric, FPKM

Smallintestine5

numeric, FPKM

Smallintestine6

numeric, FPKM

Prostate7

numeric, FPKM

Esophagus3

numeric, FPKM

Thyroid5

numeric, FPKM

Heart7

numeric, FPKM

Liver3

numeric, FPKM

Testis5

numeric, FPKM

Spleen3

numeric, FPKM

Adrenal4

numeric, FPKM

Salivarygland3

numeric, FPKM

Smallintestine7

numeric, FPKM

Salivarygland4

numeric, FPKM

Bladder4

numeric, FPKM

Thyroid6

numeric, FPKM

Smallintestine8

numeric, FPKM

Lung5

numeric, FPKM

Bonemarrow6

numeric, FPKM

Lymphnode7

numeric, FPKM

Gallbladder4

numeric, FPKM

Thyroid7

numeric, FPKM

Pancreas1

numeric, FPKM

Heart8

numeric, FPKM

Adipose5

numeric, FPKM

Cerebralcortex1

numeric, FPKM

Endometrium4

numeric, FPKM

Esophagus4

numeric, FPKM

Heart9

numeric, FPKM

Pancreas2

numeric, FPKM

Appendix3

numeric, FPKM

Endometrium5

numeric, FPKM

Lung6

numeric, FPKM

Lymphnode8

numeric, FPKM

Lymphnode9

numeric, FPKM

Duodenum1

numeric, FPKM

Kidney2

numeric, FPKM

Lung7

numeric, FPKM

Duodenum2

numeric, FPKM

Testis6

numeric, FPKM

Bladder5

numeric, FPKM

Spleen4

numeric, FPKM

Salivarygland5

numeric, FPKM

Adrenal5

numeric, FPKM

Liver4

numeric, FPKM

Adrenal6

numeric, FPKM

Bladder6

numeric, FPKM

Appendix4

numeric, FPKM

Cerebralcortex2

numeric, FPKM

Testis7

numeric, FPKM

Duodenum3

numeric, FPKM

Ovary3

numeric, FPKM

Salivarygland6

numeric, FPKM

Skin5

numeric, FPKM

Duodenum4

numeric, FPKM

Colon5

numeric, FPKM

Liver5

numeric, FPKM

Skin6

numeric, FPKM

Appendix5

numeric, FPKM

Pancreas3

numeric, FPKM

Stomach3

numeric, FPKM

Kidney3

numeric, FPKM

Bonemarrow7

numeric, FPKM

Gallbladder5

numeric, FPKM

Lymphnode10

numeric, FPKM

Esophagus5

numeric, FPKM

Spleen5

numeric, FPKM

Gallbladder6

numeric, FPKM

Lymphnode11

numeric, FPKM

Placenta6

numeric, FPKM

Cerebralcortex3

numeric, FPKM

Placenta7

numeric, FPKM

Pancreas4

numeric, FPKM

Gallbladder7

numeric, FPKM

Appendix6

numeric, FPKM

Ovary4

numeric, FPKM

Thyroid8

numeric, FPKM

Colon6

numeric, FPKM

Stomach4

numeric, FPKM

Bonemarrow8

numeric, FPKM

Lung8

numeric, FPKM

Lymphnode12

numeric, FPKM

Esophagus6

numeric, FPKM

Endometrium6

numeric, FPKM

Thyroid9

numeric, FPKM

Testis8

numeric, FPKM

Lymphnode13

numeric, FPKM

Kidney4

numeric, FPKM

Endometrium7

numeric, FPKM

Colon7

numeric, FPKM

Colon8

numeric, FPKM

Endometrium8

numeric, FPKM

Endometrium9

numeric, FPKM

Fallopiantube1

numeric, FPKM

Fallopiantube2

numeric, FPKM

Fallopiantube3

numeric, FPKM

Fallopiantube4

numeric, FPKM

Fallopiantube5

numeric, FPKM

Fallopiantube6

numeric, FPKM

Adipose6

numeric, FPKM

Adipose7

numeric, FPKM

Rectum1

numeric, FPKM

Rectum2

numeric, FPKM

Rectum3

numeric, FPKM

Rectum4

numeric, FPKM

Skeletalmuscle1

numeric, FPKM

Skeletalmuscle2

numeric, FPKM

Skeletalmuscle3

numeric, FPKM

Skeletalmuscle4

numeric, FPKM

Skeletalmuscle5

numeric, FPKM

Skeletalmuscle6

numeric, FPKM

Smoothmuscle1

numeric, FPKM

Smoothmuscle2

numeric, FPKM

Smoothmuscle3

numeric, FPKM

Tonsil1

numeric, FPKM

Tonsil2

numeric, FPKM

Tonsil3

numeric, FPKM

Ovary5

numeric, FPKM

barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.