uhlen.htseq.raw.pooled.tech: Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)...

In barzine/barzinePhdData: Data to be used with barzinePhdR

Description

Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836) mapped to Ensembl 76 (GRCh38) and quantified with HTSeq-cout (not normalised counts). All the technical replicates have been aggregated together (mean values). See for more details chapters 1 and 2 of Barzine, M.P PhD thesis: Investigating Normal Human Gene Expression in Tissues with High-throughput Transcriptomic and Proteomic data.

Usage

uhlen.htseq.raw.pooled.tech

Format

A data frame with 52655 transcritps (ie rows/observations) for 122 samples (ie columns/variables)

Adipose.V1

numeric, count

Adipose.V20

numeric, count

Adipose.V2

numeric, count

Adipose.fat_8a

numeric, count

Adipose.fat_8b

numeric, count

Adrenal.V119

numeric, count

Adrenal.V121

numeric, count

Adrenal.V122

numeric, count

Appendix.V155

numeric, count

Appendix.V154

numeric, count

Appendix.V160

numeric, count

Urinarybladder.V177

numeric, count

Urinarybladder.V176

numeric, count

Bone.marrow.V250

numeric, count

Bone.marrow.V248

numeric, count

Bone.marrow.V249

numeric, count

Bone.marrow.V230

numeric, count

Cerebral.cortex.V29

numeric, count

Cerebral.cortex.V103

numeric, count

Cerebral.cortex.V102

numeric, count

Colon.V10

numeric, count

Colon.V15

numeric, count

Colon.V11

numeric, count

Colon.V22

numeric, count

Colon.V14

numeric, count

Colon.colon8a

numeric, count

Colon.colon8b

numeric, count

Duodenum.V150

numeric, count

Duodenum.V145

numeric, count

Endometrium.V200

numeric, count

Endometrium.V165

numeric, count

Endometrium.V143

numeric, count

Endometrium.endometrium8a

numeric, count

Endometrium.endometrium8b

numeric, count

Esophagus.V184

numeric, count

Esophagus.V185

numeric, count

Esophagus.V183

numeric, count

Fallopian.tube.fallopiantube_5a

numeric, count

Fallopian.tube.fallopiantube_8b

numeric, count

Fallopian.tube.fallopiantube_8c

numeric, count

Fallopian.tube.fallopiantube_8d

numeric, count

Fallopian.tube.fallopiantube_8e

numeric, count

Gallbladder.V182

numeric, count

Gallbladder.V179

numeric, count

Gallbladder.V186

numeric, count

Heart.V191

numeric, count

Heart.V237

numeric, count

Heart.V235

numeric, count

Heart.V195

numeric, count

Kidney.V24

numeric, count

Kidney.V6

numeric, count

Kidney.V23

numeric, count

Kidney.V5

numeric, count

Liver.V110

numeric, count

Liver.V111

numeric, count

Liver.V108

numeric, count

Lung.V130

numeric, count

Lung.V81

numeric, count

Lung.V80

numeric, count

Lung.V133

numeric, count

Lung.V131

numeric, count

Lymph.node.V193

numeric, count

Lymph.node.V164

numeric, count

Lymph.node.V157

numeric, count

Lymph.node.V192

numeric, count

Lymph.node.V190

numeric, count

Ovary.V233

numeric, count

Ovary.V234

numeric, count

Ovary.ovary_8a

numeric, count

Pancreas.V232

numeric, count

Pancreas.V229

numeric, count

Placenta.V224

numeric, count

Placenta.V221

numeric, count

Placenta.V76

numeric, count

Placenta.V223

numeric, count

Prostate.V127

numeric, count

Prostate.V128

numeric, count

Prostate.V129

numeric, count

Prostate.V12

numeric, count

Rectum.rectum_8a

numeric, count

Rectum.rectum_8b

numeric, count

Rectum.rectum_8c

numeric, count

Rectum.rectum_8d

numeric, count

Salivary.gland.V238

numeric, count

Salivary.gland.V240

numeric, count

Salivary.gland.V239

numeric, count

Skeletal.muscle.skeletalmuscle_a

numeric, count

Skeletal.muscle.skeletalmuscle_b

numeric, count

Skeletal.muscle.skeletalmuscle_c

numeric, count

Skeletal.muscle.skeletalmuscle_d

numeric, count

Skeletal.muscle.skeletalmuscle_e

numeric, count

Skin.V245

numeric, count

Skin.V247

numeric, count

Skin.V246

numeric, count

Small.intestine.V151

numeric, count

Small.intestine.V152

numeric, count

Small.intestine.V153

numeric, count

Small.intestine.V156

numeric, count

Smooth.muscle.smoothmuscle_8a

numeric, count

Smooth.muscle.smoothmuscle_8b

numeric, count

Smooth.muscle.smoothmuscle_8c

numeric, count

Spleen.V82

numeric, count

Spleen.V83

numeric, count

Spleen.V85

numeric, count

Spleen.V84

numeric, count

Stomach.V91

numeric, count

Stomach.V90

numeric, count

Stomach.V18

numeric, count

Testis.V134

numeric, count

Testis.V255

numeric, count

Testis.V257

numeric, count

Testis.V259

numeric, count

Testis.V258

numeric, count

Testis.V256

numeric, count

Testis.V260

numeric, count

Thyroid.V197

numeric, count

Thyroid.V196

numeric, count

Thyroid.V198

numeric, count

Thyroid.V199

numeric, count

Tonsil.tonsil_8a1

numeric, count

Tonsil.tonsil_8b1

numeric, count

Tonsil.tonsil_8e1

numeric, count

barzine/barzinePhdData documentation built on April 4, 2021, 9:23 a.m.