run_spatial_sim_tests_multi: run_spatial_sim_tests_multi

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

runs all spatial tests for multiple probabilities and repetitions

Usage

run_spatial_sim_tests_multi(
  gobject,
  pattern_name = "pattern",
  pattern_cell_ids = NULL,
  gene_name = NULL,
  spatial_probs = c(0.5, 1),
  reps = 2,
  spatial_network_name = "kNN_network",
  spat_methods = c("binSpect_single", "binSpect_multi", "spatialDE", "spark"),
  spat_methods_params = list(NA, NA, NA, NA),
  spat_methods_names = c("binSpect_single", "binSpect_multi", "spatialDE", "spark"),
  save_plot = FALSE,
  save_raw = FALSE,
  save_norm = FALSE,
  save_dir = "~",
  verbose = TRUE,
  run_simulations = TRUE,
  ...
)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.