meta_heatmap_ploting: Manual annotation heatmap plotting

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Manual annotation heatmap plotting

Description

Manual annotation heatmap plotting

Usage

meta_heatmap_ploting(
  sce,
  clus_cor_method = "pearson",
  clus_cluster_method = "complete",
  values_cor_method = "pearson",
  values_cluster_method = "complete",
  clustering,
  show_value = "value",
  gradient_midpoint = 0,
  gradient_limits = NULL,
  x_text_size = 10,
  x_text_angle = 45,
  y_text_size = 10,
  strip_text_size = 8,
  low = "blue",
  mid = "white",
  high = "red",
  spatial = FALSE,
  dimred = dimred,
  make_cell_plot = FALSE,
  out_dir = NULL
)

Arguments

sce	A SingleCellAnnotation object
clustering	Selected clustering
spatial	Logical vector, if include spot images for each anotation
make_cell_plot	Logical vector, if include pseudotissue images, for spatial extension

bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.