run_page_man_annotation: Calculate and run PAGE annotation.
In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language
View source: R/manual_cell_annotation.R
run_page_man_annotation R Documentation
Calculate and run PAGE annotation.
Description
Calculate and run PAGE annotation.
Usage
run_page_man_annotation(
sign_matrix,
sce,
values = "logcounts",
scale = NULL,
overlap = 5,
reverse_log_scale = FALSE,
selected_annotation = NULL,
output_enrichment = "zscore"
)
Arguments
sign_matrix
precalculated signature matrix
sce
A SingleCellExperiment object
values
A expresion indicating which values use, logcounts as default
bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.
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View source: R/manual_cell_annotation.R
| run_page_man_annotation | R Documentation |
Calculate and run PAGE annotation.
Description
Calculate and run PAGE annotation.
Usage
run_page_man_annotation(
sign_matrix,
sce,
values = "logcounts",
scale = NULL,
overlap = 5,
reverse_log_scale = FALSE,
selected_annotation = NULL,
output_enrichment = "zscore"
)
Arguments
sign_matrix |
precalculated signature matrix |
sce |
A |
values |
A expresion indicating which values use, logcounts as default |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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