simATACCompare: Compare the main parameters of simATAC's simulated bin by...

In bowang-lab/simATAC: This package is a single-cell ATAC-seq simulator

Description

Compare the main parameters of simATAC's simulated bin by cell matrix to real matrix, including library size, bin mean, non-zero cell proportion, the relation between bin means and non-zero cell proportions in real and simulated matrices, and the Pearson correlation of the bin mean and non-zero cell proporton parameters in the real and simulated count matrices (if the number of simulated cells equals the number of real cells).

Usage

simATACCompare(sim, real, address, name)

Arguments

sim	Simulated bin by cell sparse matrix.
real	Real bin by cell sparse matrix.
address	Folder address to save plots.
name	Name of the data.

bowang-lab/simATAC documentation built on Jan. 28, 2021, 1:22 a.m.