simATACgetFeatureByCell: Convert raw bin by cell matrix in an SingleCellExperiment...

In bowang-lab/simATAC: This package is a single-cell ATAC-seq simulator

Description

Convert raw bin by cell matrix in an SingleCellExperiment object into the region by cell matrix, with regions defined in the input BED file.

Usage

simATACgetFeatureByCell(sim, file.bed)

Arguments

sim	SingleCellExperiment object containing simulation parameters.
file.bed	BED file containing chromosome, start, and end positions of regions.

Value

Sparse matrix containing bins having intersection with the regions in the BED file.

bowang-lab/simATAC documentation built on Jan. 28, 2021, 1:22 a.m.