simATACgetPeakByCell: Convert raw bin by cell matrix in an SingleCellExperiment...
In bowang-lab/simATAC: This package is a single-cell ATAC-seq simulator
Description
Usage
Arguments
Value
View source: R/ExtraFunctions.R
Description
Convert raw bin by cell matrix in an SingleCellExperiment object into the
peak by cell matrix by extracting bins having the highest means.
Usage
1
simATACgetPeakByCell(sim, peak.num = 5000)
Arguments
sim
SingleCellExperiment object containing simulation parameters.
peak.num
Number of peak bins to extract from the input bin by cell matrix.
Value
Sparse matrix containing peak.num bins with the highest bin means.
bowang-lab/simATAC documentation built on Jan. 28, 2021, 1:22 a.m.
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Description Usage Arguments Value
View source: R/ExtraFunctions.R
Description
Convert raw bin by cell matrix in an SingleCellExperiment object into the peak by cell matrix by extracting bins having the highest means.
Usage
1 | simATACgetPeakByCell(sim, peak.num = 5000)
|
Arguments
sim |
SingleCellExperiment object containing simulation parameters. |
peak.num |
Number of peak bins to extract from the input bin by cell matrix. |
Value
Sparse matrix containing peak.num bins with the highest bin means.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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