simATACEstimate: Estimate simATAC simulation parameters

In bowang-lab/simATAC: This package is a single-cell ATAC-seq simulator

Description

Estimate parameters for the simATAC simulation from a real bin by cell input matrix.

Usage

simATACEstimate(count, object = newsimATACCount(), verbose = TRUE)

## S3 method for class 'SingleCellExperiment'
simATACEstimate(count, object = newsimATACCount(), verbose = TRUE)

## S3 method for class 'dgCMatrix'
simATACEstimate(count, object = newsimATACCount(), verbose = TRUE)

Arguments

count	Either a sparse bin by cell count matrix, or a SingleCellExperiment object containing a count matrix to estimate parameters.
object	simATACCount object to store estimated parameters and count matrix in it.
verbose	Logical variable. Prints the simulation progress if TRUE.

Value

simATACCount object containing the estimated counts and parameters.

See Also

simATACEstLibSize, simATACEstNonZeroPro simATACEstBinMean

bowang-lab/simATAC documentation built on Jan. 28, 2021, 1:22 a.m.