cycleBLAST: Repeatedly call epitopeBLAST to iterate through all index...

In brandonsie/epitopefindr: Minimal Overlaps from BLAST Alignments

Repeatedly call epitopeBLAST to iterate through all index peptides until all peptides are converted to trimmed epitopes.

Description

Repeatedly call epitopeBLAST to iterate through all index peptides until all peptides are converted to trimmed epitopes.

Usage

cycleBLAST(data, pb, n, aln.size, verbose = FALSE)

Arguments

data	List of BLAST alignment table and fastra file to process.
pb	txtProgressBar object to update
n	Value to update txtProgressBar object.
aln.size	Minimum length of alignment to consider from BLASTp alignments of 'data'.
verbose	Logical whether or not to print status updates to console.

Value

List data containing modified BLAST alignment table and fasta file.

brandonsie/epitopefindr documentation built on May 4, 2024, 10:27 a.m.