outputTable | R Documentation |
Generates tables of reportable data on identified minimal alignments.
outputTable(
blast,
fasta.initial,
groups,
msacs,
key_filename,
summary_filename
)
blast |
BLAST alignment table to report. |
fasta.initial |
Starting peptide sequences as AAStringSet. |
groups |
Groups table of final epitopes to report. |
msacs |
MSA consensus sequences for each group in order. |
key_filename |
Epitope Key table filename to write. |
summary_filename |
Epitope Summary table filename to write. |
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