outputTable: Generates tables of reportable data on identified minimal...

In brandonsie/epitopefindr: Minimal Overlaps from BLAST Alignments

Generates tables of reportable data on identified minimal alignments.

Description

Generates tables of reportable data on identified minimal alignments.

Usage

outputTable(
  blast,
  fasta.initial,
  groups,
  msacs,
  key_filename,
  summary_filename
)

Arguments

blast	BLAST alignment table to report.
fasta.initial	Starting peptide sequences as AAStringSet.
groups	Groups table of final epitopes to report.
msacs	MSA consensus sequences for each group in order.
key_filename	Epitope Key table filename to write.
summary_filename	Epitope Summary table filename to write.

brandonsie/epitopefindr documentation built on May 4, 2024, 10:27 a.m.