tidyBLAST: Call a series of functions to tidy raw BLAST alignment table...
In brandonsie/epitopefindr: Minimal Overlaps from BLAST Alignments
Description
Call a series of functions to tidy raw BLAST alignment table for use.
Usage
1
tidyBLAST(blast, fasta, aln.size, use.doParallel)
Arguments
blast
Initial BLAST table to tidy.
fasta
Path to fasta sequences to reference to annotate BLAST table
aln.size
Minimum length of alignment to consider from BLASTp alignments of 'data'.
with peptide sequences.
use.doParallel
Logical whether or not to use doParallel parallelization.
brandonsie/epitopefindr documentation built on Oct. 31, 2021, 5:20 p.m.
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Description
Call a series of functions to tidy raw BLAST alignment table for use.
Usage
1 | tidyBLAST(blast, fasta, aln.size, use.doParallel)
|
Arguments
blast |
Initial BLAST table to tidy. |
fasta |
Path to fasta sequences to reference to annotate BLAST table |
aln.size |
Minimum length of alignment to consider from BLASTp alignments of 'data'. with peptide sequences. |
use.doParallel |
Logical whether or not to use doParallel parallelization. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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