Files in brandonsie/epitopefindr
Minimal Overlaps from BLAST Alignments

.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/addPepSeq.R R/chooseIndex.R R/cycleBLAST.R R/dbCleanup.R R/decipherGaps.R R/epFind.R R/epPB.R R/epSetupBLAST.R R/epSetupDirectory.R R/epSetupPeptides.R R/epitopeBLAST.R R/epitopefindr.R R/filterBLAST.R R/glAssign.R R/glGet.R R/glParamAssign.R R/glParamGet.R R/groupMSA.R R/indexEpitopes.R R/indexGroups.R R/isOverlapping.R R/makeIR.R R/mergeFastaDuplicates.R R/numAlignments.R R/organizeBLAST.R R/outputFiles.R R/outputTable.R R/pbCycleBLAST.R R/prepareBLAST.R R/printSignpost.R R/qsSwap.R R/queryBLASTaa.R R/removeSmallAln.R R/selfBLASTaa.R R/threshBLAST.R R/tidyBLAST.R R/tidyFasta.R R/trimEpitopes.R R/unmergeFastaDuplicates.R R/writeFastaAA.R R/zzz.R
epitopefindr.Rproj
man/addPepSeq.Rd man/chooseIndex.Rd man/cycleBLAST.Rd man/dbCleanup.Rd man/decipherGaps.Rd man/epFind.Rd man/epPB.Rd man/epSetupBLAST.Rd man/epSetupDirectory.Rd man/epSetupPeptides.Rd man/epitopeBLAST.Rd man/epitopefindr.Rd man/epitopefindrEnv.Rd man/filterBLAST.Rd man/glAssign.Rd man/glGet.Rd man/glParamAssign.Rd man/glParamGet.Rd man/groupMSA.Rd man/indexEpitopes.Rd man/indexGroups.Rd man/isOverlapping.Rd man/makeIR.Rd man/mergeFastaDuplicates.Rd man/numAlignments.Rd man/organizeBLAST.Rd man/outputFiles.Rd man/outputTable.Rd man/pbCycleBLAST.Rd man/prepareBLAST.Rd man/printSignpost.Rd man/qsSwap.Rd man/queryBLASTaa.Rd man/removeSmallAln.Rd man/selfBLASTaa.Rd man/threshBLAST.Rd man/tidyBLAST.Rd man/tidyFasta.Rd man/trimEpitopes.Rd man/unmergeFastaDuplicates.Rd man/writeFastaAA.Rd readme.md
brandonsie/epitopefindr documentation built on Jan. 5, 2019, 12:18 p.m.