prepareBLAST: Call series of functions to standardize BLAST table for...
In brandonsie/epitopefindr: Minimal Overlaps from BLAST Alignments
prepareBLAST R Documentation
Call series of functions to standardize BLAST table for computation.
Description
Call series of functions to standardize BLAST table for computation.
Usage
prepareBLAST(blast, fasta, aln.size, use.doParallel = FALSE, tofilter = TRUE)
Arguments
blast
Input tidied BLAST table.
fasta
AAstringset object of fasta sequences.
aln.size
Minimum length of alignment to consider from BLASTp alignments of 'data'.
use.doParallel
Logical whether or not to use doParallel parallelization.
tofilter
Logical whether or not to call filterBLAST, which is only
necessary during initial setup.
brandonsie/epitopefindr documentation built on May 4, 2024, 10:27 a.m.
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| prepareBLAST | R Documentation |
Call series of functions to standardize BLAST table for computation.
Description
Call series of functions to standardize BLAST table for computation.
Usage
prepareBLAST(blast, fasta, aln.size, use.doParallel = FALSE, tofilter = TRUE)
Arguments
blast |
Input tidied BLAST table. |
fasta |
AAstringset object of fasta sequences. |
aln.size |
Minimum length of alignment to consider from BLASTp alignments of 'data'. |
use.doParallel |
Logical whether or not to use doParallel parallelization. |
tofilter |
Logical whether or not to call filterBLAST, which is only necessary during initial setup. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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