View source: R/isOverlapping.R
isOverlapping | R Documentation |
Checks whether the stard/end pos in pattern overlaps with the start/end pos of each row in table by at least almin and returns positions in table that overlap.
isOverlapping(pattern, table, aln.size = 7)
pattern |
IR query pattern sequence positions. |
table |
IR reference table positions to check for overlap with pattern. |
aln.size |
Minimum allowable overlap considered valid. |
Positions in table
that overlap.
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