isOverlapping: Checks whether the stard/end pos in pattern overlaps with the...

In brandonsie/epitopefindr: Minimal Overlaps from BLAST Alignments

Checks whether the stard/end pos in pattern overlaps with the start/end pos of each row in table by at least almin and returns positions in table that overlap.

Description

Checks whether the stard/end pos in pattern overlaps with the start/end pos of each row in table by at least almin and returns positions in table that overlap.

Usage

isOverlapping(pattern, table, aln.size = 7)

Arguments

pattern	IR query pattern sequence positions.
table	IR reference table positions to check for overlap with pattern.
aln.size	Minimum allowable overlap considered valid.

Value

Positions in table that overlap.

brandonsie/epitopefindr documentation built on May 4, 2024, 10:27 a.m.