pbCycleBLAST: Initialize a txtProgressBar object with which to call...
In brandonsie/epitopefindr: Minimal Overlaps from BLAST Alignments
pbCycleBLAST R Documentation
Initialize a txtProgressBar object with which to call cycleBLAST.
Description
Initialize a txtProgressBar object with which to call cycleBLAST.
Usage
pbCycleBLAST(blast, fasta, aln.size, ncycles = "max")
Arguments
blast
BLAST alignment table to process.
fasta
Fasta file of peptide sequences to process.
aln.size
Minimum length of alignment to consider from BLASTp alignments of 'data'.
ncycles
Number of cycles of cycleBLAST to perform.
brandonsie/epitopefindr documentation built on May 4, 2024, 10:27 a.m.
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| pbCycleBLAST | R Documentation |
Initialize a txtProgressBar object with which to call cycleBLAST.
Description
Initialize a txtProgressBar object with which to call cycleBLAST.
Usage
pbCycleBLAST(blast, fasta, aln.size, ncycles = "max")
Arguments
blast |
BLAST alignment table to process. |
fasta |
Fasta file of peptide sequences to process. |
aln.size |
Minimum length of alignment to consider from BLASTp alignments of 'data'. |
ncycles |
Number of cycles of cycleBLAST to perform. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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