trimEpitopes: Update BLAST table positions to reflect smaller intervals...
In brandonsie/epitopefindr: Minimal Overlaps from BLAST Alignments
trimEpitopes R Documentation
Update BLAST table positions to reflect smaller intervals when a subinterval
has been determined as the minimal overlap of alignments to a peptide.
Description
Update BLAST table positions to reflect smaller intervals when a subinterval
has been determined as the minimal overlap of alignments to a peptide.
Usage
trimEpitopes(data, aln.size, tofilter = FALSE)
Arguments
data
List containing BLAST table and fasta file and index peptide order to process.
aln.size
Minimum length of alignment to consider from BLASTp alignments of 'data'.
tofilter
Binary whether or not to filter BLAST table entries.
brandonsie/epitopefindr documentation built on April 29, 2024, 7:24 a.m.
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| trimEpitopes | R Documentation |
Update BLAST table positions to reflect smaller intervals when a subinterval has been determined as the minimal overlap of alignments to a peptide.
Description
Update BLAST table positions to reflect smaller intervals when a subinterval has been determined as the minimal overlap of alignments to a peptide.
Usage
trimEpitopes(data, aln.size, tofilter = FALSE)
Arguments
data |
List containing BLAST table and fasta file and index peptide order to process. |
aln.size |
Minimum length of alignment to consider from BLASTp alignments of 'data'. |
tofilter |
Binary whether or not to filter BLAST table entries. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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