indexEpitopes: For a specified index peptide, identify the maximal intervals...
In brandonsie/epitopefindr: Minimal Overlaps from BLAST Alignments
View source: R/indexEpitopes.R
indexEpitopes R Documentation
For a specified index peptide, identify the maximal intervals that represent
the consensus overlap of reported BLAST alignments to that peptide. Update
the BLAST table accordingly.
Description
For a specified index peptide, identify the maximal intervals that represent
the consensus overlap of reported BLAST alignments to that peptide. Update
the BLAST table accordingly.
Usage
indexEpitopes(blast, index, aln.size)
Arguments
blast
BLAST alignment table to process.
index
Name of index peptide to process.
aln.size
Minimum length of alignment to consider from BLASTp alignments of 'data'.
brandonsie/epitopefindr documentation built on May 4, 2024, 10:27 a.m.
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View source: R/indexEpitopes.R
| indexEpitopes | R Documentation |
For a specified index peptide, identify the maximal intervals that represent the consensus overlap of reported BLAST alignments to that peptide. Update the BLAST table accordingly.
Description
For a specified index peptide, identify the maximal intervals that represent the consensus overlap of reported BLAST alignments to that peptide. Update the BLAST table accordingly.
Usage
indexEpitopes(blast, index, aln.size)
Arguments
blast |
BLAST alignment table to process. |
index |
Name of index peptide to process. |
aln.size |
Minimum length of alignment to consider from BLASTp alignments of 'data'. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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