Files in brucemoran/RNAseqR
RNAseq DE Analysis Downstream from Nextflow Pipelines
DESCRIPTION
NAMESPACE
R/DESeq2_module.R
R/aracne-ap_viper.R
R/dupradar.R
R/edgeR_module.R
R/fgsea.R
R/limma_module.R
R/post_module_joins.R
R/prep_RNAseq_output.R
R/ssgsea.R
R/wrapper_scripts.R
inst/extdata/Liberzon_2015_Table1_Hallmark_categories.csv
man/BMplotPCA.Rd
man/DESeq2_module.Rd
man/biomaRt_anno_orth.Rd
man/brucemoran_rnaseq_kallisto_parser.Rd
man/dupradar_run.Rd
man/edgeR_module.Rd
man/fgsea_plot.Rd
man/fgsea_ssgsea_msviper.Rd
man/found_in_three.Rd
man/found_in_two.Rd
man/genesGTF.Rd
man/get_metadata.Rd
man/get_tx2gene.Rd
man/group_agg_multi.Rd
man/group_agg_two.Rd
man/highest_exp_wides.Rd
man/limma_module.Rd
man/make_aracne_inputs.Rd
man/master_parse_join.Rd
man/msigdb_pathways_to_list.Rd
man/nf_core_rnaseq_featco_parser.Rd
man/nf_core_rnaseq_star_salmon_parser.Rd
man/obs_raw_widen.Rd
man/parse_aracne.Rd
man/per_contrast_fgsea_de.Rd
man/run_msviper.Rd
man/run_prep_modules_bm.Rd
man/so_obs_raw_out.Rd
man/so_to_raw_counts.Rd
man/ssgsea_pca.Rd
man/ssgsea_rotationPCA.Rd
man/stringTie_res_join.Rd
man/venn_3.Rd
