dupradar_run: Function to run fGSEA using the mSIGDB database from Broad
In brucemoran/RNAseqR: RNAseq DE Analysis Downstream from Nextflow Pipelines
Description
Usage
Arguments
Value
Description
Function to run fGSEA using the mSIGDB database from Broad
Usage
1
dupradar_run(gtf, paired, stranded = "0", threads)
Arguments
gtf
path/to/GTF.gtf
paired
boolean of whether BAM data is paired
stranded
string '0', '1', '2', indicating 'unstranded', 'forward', reverse' respectively
threads
total threads used to run
Value
RData object of dupRadar outputs in list
brucemoran/RNAseqR documentation built on Sept. 14, 2021, 11:08 a.m.
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Description Usage Arguments Value
Description
Function to run fGSEA using the mSIGDB database from Broad
Usage
1 | dupradar_run(gtf, paired, stranded = "0", threads)
|
Arguments
gtf |
path/to/GTF.gtf |
paired |
boolean of whether BAM data is paired |
stranded |
string '0', '1', '2', indicating 'unstranded', 'forward', reverse' respectively |
threads |
total threads used to run |
Value
RData object of dupRadar outputs in list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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