biomaRt_anno_orth: Take two inputs of datasets in biomaRt::useMart and return...

Description Usage Arguments Value

View source: R/DESeq2_module.R

Description

Take two inputs of datasets in biomaRt::useMart and return the tibble of the matched orthologs

Usage

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biomaRt_anno_orth(
  human_genome = "hsapiens_gene_ensembl",
  org_prefix = NULL,
  ens_version = NULL
)

Arguments

human_genome

is the genome against which we want orthologs (set as human but changeble with unknown results)

org_prefix

string indicating the name of the organism which is suffixed with '_gene_ensembl' for biomaRt

ens_version

string indicating version of ENSEMBL to use

Value

ensid2gene2orth a tibble of orthologs in ensembl - gene name - ortholog


brucemoran/RNAseqR documentation built on Sept. 14, 2021, 11:08 a.m.