highest_exp_wides: The situation arises where a single gene name maps to...

In brucemoran/RNAseqR: RNAseq DE Analysis Downstream from Nextflow Pipelines

Description

The situation arises where a single gene name maps to multiple gene identifiers e.g. ENSG00000271503, ENSG00000274233 both map to CCL5 this function takes wide format input with at least 3 rows: 1: gene name 2: gene identifier 3: expression value(s) can be index of columns function returns a wide format object with highest expression name+id also returns full mapping info and mean expression value per name, id pairs

Usage

highest_exp_wides(wide_object, name_col, id_col, value_cols)

Arguments

wide_object	a wide tibble or df
name_col	naming column (gene name)
id_col	identification column (gene ID, i.e. ENSID)
value_col	expression value column (can be index)

Value

wide format with higehst exp. when multiple genes same named

brucemoran/RNAseqR documentation built on Sept. 14, 2021, 11:08 a.m.