per_contrast_fgsea_de: Function to take output table from multiple contrasts take...

In brucemoran/RNAseqR: RNAseq DE Analysis Downstream from Nextflow Pipelines

Description

Function to take output table from multiple contrasts take each level of contrasts and combine those levels into master tables filter based on min genes per master table

Usage

per_contrast_fgsea_de(fgsea_contrast_list, occupancy = 5, output_dir, tag)

Arguments

fgsea_contrast_list	named list returned from lapply on fgsea_plot()
occupancy	% of genes in the pathway that allow use of the pathway for ssgsea
output_dir	path to where output goes
tag	string used to prefix output

Value

table of pathways for each contrast level

brucemoran/RNAseqR documentation built on Sept. 14, 2021, 11:08 a.m.