obs_raw_widen: Create wide tibble from sleuth object sums transcripts from a...

In brucemoran/RNAseqR: RNAseq DE Analysis Downstream from Nextflow Pipelines

Description

Create wide tibble from sleuth object sums transcripts from a gene-mode sleuth object into counts of those genes

Usage

obs_raw_widen(so, which_value, group_col)

Arguments

so	sleuth object from sleuth_prep in gene_mode
which_value	which 'values_from' to use for generating output (default: 'est_counts', else 'tpm')
group_col	string of column to use in aggregating ("ensembl_gene_id" if NULL)

Value

so which has $obs_raw_count$wide and $long

brucemoran/RNAseqR documentation built on Sept. 14, 2021, 11:08 a.m.