BMplotPCA: Plotting PCA function
In brucemoran/RNAseqR: RNAseq DE Analysis Downstream from Nextflow Pipelines
Description
Usage
Arguments
Value
View source: R/DESeq2_module.R
Description
Plotting PCA function
Usage
1
Arguments
x
variance stabilized DESeq2 object
intgroup
which colname from metadata_csv to be output on plot
ntop
top n genes to use by variance
anno_tb
tibble of ensembl_gene_id - external_gene_id mappings for annotation
pc_limit
integer percent variance accounted by PC for inclusion in plots (default: 10%)
Value
list of ggplot2 objects for printing (PCA, PCs, loadings)
brucemoran/RNAseqR documentation built on Sept. 14, 2021, 11:08 a.m.
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Description Usage Arguments Value
View source: R/DESeq2_module.R
Description
Plotting PCA function
Usage
1 |
Arguments
x |
variance stabilized DESeq2 object |
intgroup |
which colname from metadata_csv to be output on plot |
ntop |
top n genes to use by variance |
anno_tb |
tibble of ensembl_gene_id - external_gene_id mappings for annotation |
pc_limit |
integer percent variance accounted by PC for inclusion in plots (default: 10%) |
Value
list of ggplot2 objects for printing (PCA, PCs, loadings)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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