fgsea_ssgsea_msviper: Run fgsea on each regulon set individually
In brucemoran/RNAseqR: RNAseq DE Analysis Downstream from Nextflow Pipelines

Run fgsea on each regulon set individually

fgsea_ssgsea_msviper(
  mra,
  mra_stat = "p.value",
  genome_prefix,
  msigdb_species = "Homo sapiens",
  msigdb_cat = "H",
  tag,
  exprdh,
  tx2gene,
  gene_col = "external_gene_name",
  output_dir,
  sig_val = 0.1,
  per_regulon = NULL,
  phenos
)

`mra`	msviper class object with es, ledge
`mra_stat`	statistic used to rank data, comes from msViper
`genome_prefix`	string of a genome in biomart$dataset, suffixed with '_gene_ensembl'
`msigdb_species`	one of msigdbr::msigdbr_species(), default:"Homo sapiens"
`msigdb_cat`	one of 'c("H", paste0("C", c(1:7)))', see: gsea-msigdb.org/gsea/msigdb/collections.jsp
`tag`	string used to prefix output
`exprdh`	expression data
`tx2gene`	annotation data
`gene_col`	the name of the column in tibble with gene names found in pathways, set to "rownames" if they are the rownames (default)
`output_dir`	path to where output goes
`sig_val`	significance used in analysis
`per_regulon`	flag to indicate if fgsea is at collective regulon level, or if each regulon and the genes it is co-expressed with are used
`phenos`	metadata tibble