so_obs_raw_out: Add wide and long raw count tibbles to sleuth object sums...
In brucemoran/RNAseqR: RNAseq DE Analysis Downstream from Nextflow Pipelines
Description
Usage
Arguments
Value
View source: R/prep_RNAseq_output.R
Description
Add wide and long raw count tibbles to sleuth object
sums transcripts from a gene-mode sleuth object into counts of those genes
Usage
1
so_obs_raw_out(so, group_col = NULL, which_value = "est_counts")
Arguments
so
sleuth object from sleuth_prep in gene_mode
group_col
string of column to use in aggregating ("ensembl_gene_id" if NULL)
which_value
which 'values_from' to use for generating output (default: 'est_counts', else 'tpm')
Value
so which has $obs_raw_count$wide and $long
brucemoran/RNAseqR documentation built on Sept. 14, 2021, 11:08 a.m.
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Description Usage Arguments Value
View source: R/prep_RNAseq_output.R
Description
Add wide and long raw count tibbles to sleuth object sums transcripts from a gene-mode sleuth object into counts of those genes
Usage
1 | so_obs_raw_out(so, group_col = NULL, which_value = "est_counts")
|
Arguments
so |
sleuth object from sleuth_prep in gene_mode |
group_col |
string of column to use in aggregating ("ensembl_gene_id" if NULL) |
which_value |
which 'values_from' to use for generating output (default: 'est_counts', else 'tpm') |
Value
so which has $obs_raw_count$wide and $long
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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