ssgsea_rotationPCA: Plotting PCA function

In brucemoran/RNAseqR: RNAseq DE Analysis Downstream from Nextflow Pipelines

Description

Plotting PCA function

Usage

ssgsea_rotationPCA(
  ssgsea,
  metadata,
  hallmark_tb = NULL,
  contrast,
  returnData = FALSE,
  group = NULL
)

Arguments

ssgsea	output table
metadata	tibble of sample, \<group\> where group colours the PCA
hallmark_tb	hallmark data with Process_Category column to colour by process
contrast	string to title plot
returnData	flag to allow data to be returned
intgroup	colname to use as group to colour in if not using Process Category

Value

ggp_pca_list ggplot2 object for printing, pca for safe keeping

brucemoran/RNAseqR documentation built on Sept. 14, 2021, 11:08 a.m.