run_msviper: Run msViper
In brucemoran/RNAseqR: RNAseq DE Analysis Downstream from Nextflow Pipelines
Description
Usage
Arguments
Value
View source: R/aracne-ap_viper.R
Description
Run msViper
Usage
1
run_msviper(TAG, RDATA, genome_prefix, msigdb_species)
Arguments
TAG
string identifier of the run
RDATA
RData file generated by parse_input()
genome_prefix
string of a genome in biomart$dataset, suffixed with '_gene_ensembl'
msigdb_species
one of msigdbr::msigdbr_species()
Value
none, saves RData files of output
brucemoran/RNAseqR documentation built on Sept. 14, 2021, 11:08 a.m.
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Description Usage Arguments Value
View source: R/aracne-ap_viper.R
Description
Run msViper
Usage
1 | run_msviper(TAG, RDATA, genome_prefix, msigdb_species)
|
Arguments
TAG |
string identifier of the run |
RDATA |
RData file generated by parse_input() |
genome_prefix |
string of a genome in biomart$dataset, suffixed with '_gene_ensembl' |
msigdb_species |
one of msigdbr::msigdbr_species() |
Value
none, saves RData files of output
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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