get_metadata: Make metadata from CSV input, including generation of 'path'...
In brucemoran/RNAseqR: RNAseq DE Analysis Downstream from Nextflow Pipelines
View source: R/prep_RNAseq_output.R
Description
Make metadata from CSV input, including generation of 'path' for abundance.h5 kallisto ouput
main job is recursive dir() to find abundance.h5 files
searches for dir with sampleID, then recursive-searches that for abundance.h5
Usage
1
get_metadata(metadata_csv, data_dir)
Arguments
metadata_csv
CSV format file with sample and ontehr columns
data_dir
dir from which to recursively search for abundance.h5 for samples
brucemoran/RNAseqR documentation built on Sept. 14, 2021, 11:08 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/prep_RNAseq_output.R
Description
Make metadata from CSV input, including generation of 'path' for abundance.h5 kallisto ouput main job is recursive dir() to find abundance.h5 files searches for dir with sampleID, then recursive-searches that for abundance.h5
Usage
1 | get_metadata(metadata_csv, data_dir)
|
Arguments
metadata_csv |
CSV format file with sample and ontehr columns |
data_dir |
dir from which to recursively search for abundance.h5 for samples |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.