Files in califano-lab/MOMA

Multi Omic Master Regulator Analysis

NEWS.md R/cluster.r R/data.r R/dictionary.functions.R R/diggit.r R/example.gbm.data.r R/genomic.saturation.r R/make.interactions.r R/make.saturation.plots.r R/moma.r R/rank.r README.md data-raw/gene.map.r man/Moma-class.Rd man/areaEnrich.Rd man/associateEvents.Rd man/checkGeneMap.Rd man/checkList.Rd man/checkMAE.Rd man/checkPathways.Rd man/clusterRange.Rd man/clusterReliability.Rd man/cnvScoreStouffer.Rd man/conditionalModel.Rd man/conditionalP.Rd man/empiricalP.Rd man/example.gbm.mae.Rd man/fitCurvePercent.Rd man/gbm.pathways.Rd man/gene.map.Rd man/genomicPlotSmall.Rd man/getCoverage.Rd man/getDataFrame.Rd man/getDiggitEmpiricalQvalues.Rd man/getEmpiricalQvals.Rd man/getPvalsMatrix.Rd man/getSubtypeEventTables.Rd man/integrateFunction.Rd man/integrateTZ.Rd man/makeCoverageDf.Rd man/makeSaturationPlots.Rd man/mapEntrez.Rd man/mapHugo.Rd man/mapScoresCnvBand.Rd man/mergeData.Rd man/mergeDataBySubtype.Rd man/mergeGenomicSaturation.Rd man/mergeLists.Rd man/momaConstructor.Rd man/mutSig.Rd man/oncoprintPlot.Rd man/pathwayDiggitIntersect.Rd man/plotEvents.Rd man/rea.Rd man/reaNULL.Rd man/sREA.Rd man/sampleNameFilter.Rd man/sampleOverlap.Rd man/sigInteractorsDIGGIT.Rd man/stoufferIntegrate.Rd man/stoufferIntegrateDiggit.Rd man/subsetListInteractions.Rd man/validDiggitInteractions.Rd man/viperGetSigTFS.Rd man/viperGetTFScores.Rd tests/testthat.R tests/testthat/test-mapEntrez.R vignettes/moma.Rmd