Files in catavallejos/BASiCS

Bayesian Analysis of Single-Cell Sequencing data

R/AllClasses.R R/AllGenerics.R R/BASiCS_CalculateERCC.R R/BASiCS_CorrectOffset.R R/BASiCS_DenoisedCounts.R R/BASiCS_DenoisedRates.R R/BASiCS_DetectHVG_LVG.R R/BASiCS_DiagHist.R R/BASiCS_DiagPlot.R R/BASiCS_DivideAndConquer.R R/BASiCS_Draw.R R/BASiCS_EffectiveSize.R R/BASiCS_Filter.R R/BASiCS_LoadChain.R R/BASiCS_MCMC.R R/BASiCS_MockSCE.R R/BASiCS_Package.R R/BASiCS_PlotDE.R R/BASiCS_PlotOffset.R R/BASiCS_PlotVG.R R/BASiCS_PlotVarianceDecomp.R R/BASiCS_PriorParam.R R/BASiCS_ShowFit.R R/BASiCS_Sim.R R/BASiCS_TestDE.R R/BASiCS_VarThresholdSearchHVG_LVG.R R/BASiCS_VarianceDecomp.R R/HiddenBASiCS_Sim.R R/HiddenHeaderBASiCS_Sim.R R/HiddenHeaderTest_DE.R R/HiddenVarDecomp.R R/Methods.R R/RcppExports.R R/data.R R/makeExampleBASiCS_Data.R R/newBASiCS_Chain.R R/newBASiCS_Data.R R/utils_Data.R R/utils_DivideAndConquer.R R/utils_MCMC.R R/utils_Misc.R R/utils_Store.R R/utils_Tests.R R/utils_VG.R R/welcome.R README.md man/BASiCS-defunct.Rd man/BASiCS_CalculateERCC.Rd man/BASiCS_Chain-methods.Rd man/BASiCS_Chain.Rd man/BASiCS_CorrectOffset.Rd man/BASiCS_DenoisedCounts.Rd man/BASiCS_DenoisedRates.Rd man/BASiCS_DetectVG.Rd man/BASiCS_DiagHist.Rd man/BASiCS_DiagPlot.Rd man/BASiCS_DivideAndConquer.Rd man/BASiCS_Draw.Rd man/BASiCS_EffectiveSize.Rd man/BASiCS_Filter.Rd man/BASiCS_LoadChain.Rd man/BASiCS_MCMC.Rd man/BASiCS_MockSCE.Rd man/BASiCS_PlotDE.Rd man/BASiCS_PlotOffset.Rd man/BASiCS_PlotVG.Rd man/BASiCS_PlotVarianceDecomp.Rd man/BASiCS_PriorParam.Rd man/BASiCS_Result.Rd man/BASiCS_ResultDE.Rd man/BASiCS_ResultVG.Rd man/BASiCS_ResultsDE.Rd man/BASiCS_ShowFit.Rd man/BASiCS_Sim.Rd man/BASiCS_Summary-methods.Rd man/BASiCS_Summary.Rd man/BASiCS_TestDE.Rd man/BASiCS_VarThresholdSearchHVG_LVG.Rd man/BASiCS_VarianceDecomp.Rd man/ChainRNA.Rd man/ChainRNAReg.Rd man/ChainSC.Rd man/ChainSCReg.Rd man/Summary-BASiCS_Chain-method.Rd man/as.data.frame-methods.Rd man/dim-BASiCS_Chain-method.Rd man/dimnames-BASiCS_Chain-method.Rd man/displayChainBASiCS-BASiCS_Chain-method.Rd man/displaySummaryBASiCS-BASiCS_Summary-method.Rd man/dot-generateSubsets.Rd man/format-methods.Rd man/makeExampleBASiCS_Data.Rd man/newBASiCS_Chain.Rd man/newBASiCS_Data.Rd man/plot-BASiCS_Chain-method.Rd man/plot-BASiCS_Summary-method.Rd man/rowData.Rd man/show-BASiCS_ResultDE-method.Rd man/show-BASiCS_ResultVG-method.Rd man/show-BASiCS_ResultsDE-method.Rd man/subset-BASiCS_Chain-method.Rd man/subset-methods.Rd tests/testthat.R tests/testthat/helper.R tests/testthat/test_data.R tests/testthat/test_data_examples.R tests/testthat/test_denoised.R tests/testthat/test_differential_test.R tests/testthat/test_differential_test_reg.R tests/testthat/test_divide_and_conquer.R tests/testthat/test_ess.R tests/testthat/test_filter.R tests/testthat/test_individual_updates.R tests/testthat/test_individual_updates_eb.R tests/testthat/test_lvg_hvg.R tests/testthat/test_mcmc_arguments.R tests/testthat/test_mcmc_start.R tests/testthat/test_mcmc_storage.R tests/testthat/test_methods.R tests/testthat/test_misc.R tests/testthat/test_parameter_estimation.R tests/testthat/test_parameter_estimation_batch.R tests/testthat/test_parameter_estimation_no_spike.R tests/testthat/test_parameter_estimation_no_spike_2.R tests/testthat/test_parameter_estimation_reg_no_spike.R tests/testthat/test_parameter_estimation_regression.R tests/testthat/test_plot.R tests/testthat/test_rbf.R tests/testthat/test_scran.R tests/testthat/test_sim.R tests/testthat/test_vardecomp.R vignettes/BASiCS.Rmd