computeOmicsIntersections: Compute Omics Intersections
In cavei/MOSClip: Multi Omics Survival Clip
Description
Usage
Arguments
Value
Description
Compute Omics Intersections
Usage
1
2
computeOmicsIntersections(multiPathwayReportData, pvalueThr = 0.05,
zscoreThr = 0.05, resampligThr = NULL, excludeColumns = NULL)
Arguments
multiPathwayReportData
data.frame, the output of
the multiPathwayReport or multiPathwayModuleReport functions.
pvalueThr
numeric indicating the cut-off for overall pvalue
zscoreThr
numeric indicating the cut-off for covariates coefficients
resampligThr
numeric the number of success in the resamplig procedure
excludeColumns
a vector of characters listing the columns of
multiPathwayReportData object to be excluded by the analysis.
In the case multiPathwayReportData derives from multiPathwayModuleReport
you should set excludeColumns = c("pathway","module").
Value
a list of pathway omics intersection
cavei/MOSClip documentation built on May 12, 2019, 5:22 p.m.
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Description Usage Arguments Value
Description
Compute Omics Intersections
Usage
1 2 | computeOmicsIntersections(multiPathwayReportData, pvalueThr = 0.05,
zscoreThr = 0.05, resampligThr = NULL, excludeColumns = NULL)
|
Arguments
multiPathwayReportData |
data.frame, the output of
the |
pvalueThr |
numeric indicating the cut-off for overall pvalue |
zscoreThr |
numeric indicating the cut-off for covariates coefficients |
resampligThr |
numeric the number of success in the resamplig procedure |
excludeColumns |
a vector of characters listing the columns of
|
Value
a list of pathway omics intersection
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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